TAP SET in Capsella grandiflora

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Protein source: Phytozome (proteins from primary transcripts)


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

SET
PHD
zf-C2H2
TCR
Myb_DNA-binding
CXC

(Domain names are clickable)



List of proteins (36)

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namename additionClick button to show/hide sequence: Download sequence?
Cagra.0133s0114.1.ppacid=28899457 transcript=Cagra.0133s0114.1 locus=Cagra.0133s0114 ID=Cagra.0133s0114.1.v1.1 annot-version=v1.1
Cagra.0301s0054.1.ppacid=28907819 transcript=Cagra.0301s0054.1 locus=Cagra.0301s0054 ID=Cagra.0301s0054.1.v1.1 annot-version=v1.1
Cagra.0380s0040.1.ppacid=28902135 transcript=Cagra.0380s0040.1 locus=Cagra.0380s0040 ID=Cagra.0380s0040.1.v1.1 annot-version=v1.1
Cagra.0433s0002.1.ppacid=28915602 transcript=Cagra.0433s0002.1 locus=Cagra.0433s0002 ID=Cagra.0433s0002.1.v1.1 annot-version=v1.1
Cagra.0450s0010.1.ppacid=28913162 transcript=Cagra.0450s0010.1 locus=Cagra.0450s0010 ID=Cagra.0450s0010.1.v1.1 annot-version=v1.1
Cagra.0925s0071.1.ppacid=28917149 transcript=Cagra.0925s0071.1 locus=Cagra.0925s0071 ID=Cagra.0925s0071.1.v1.1 annot-version=v1.1
Cagra.0993s0026.1.ppacid=28903444 transcript=Cagra.0993s0026.1 locus=Cagra.0993s0026 ID=Cagra.0993s0026.1.v1.1 annot-version=v1.1
Cagra.1013s0001.1.ppacid=28916252 transcript=Cagra.1013s0001.1 locus=Cagra.1013s0001 ID=Cagra.1013s0001.1.v1.1 annot-version=v1.1
Cagra.1150s0026.1.ppacid=28905426 transcript=Cagra.1150s0026.1 locus=Cagra.1150s0026 ID=Cagra.1150s0026.1.v1.1 annot-version=v1.1
Cagra.13578s0003.1.ppacid=28915109 transcript=Cagra.13578s0003.1 locus=Cagra.13578s0003 ID=Cagra.13578s0003.1.v1.1 annot-version=v1.1
Cagra.14132s0001.1.ppacid=28919999 transcript=Cagra.14132s0001.1 locus=Cagra.14132s0001 ID=Cagra.14132s0001.1.v1.1 annot-version=v1.1
Cagra.1504s0002.1.ppacid=28910298 transcript=Cagra.1504s0002.1 locus=Cagra.1504s0002 ID=Cagra.1504s0002.1.v1.1 annot-version=v1.1
Cagra.1517s0044.1.ppacid=28899359 transcript=Cagra.1517s0044.1 locus=Cagra.1517s0044 ID=Cagra.1517s0044.1.v1.1 annot-version=v1.1
Cagra.1626s0007.1.ppacid=28904408 transcript=Cagra.1626s0007.1 locus=Cagra.1626s0007 ID=Cagra.1626s0007.1.v1.1 annot-version=v1.1
Cagra.1671s0023.1.ppacid=28914334 transcript=Cagra.1671s0023.1 locus=Cagra.1671s0023 ID=Cagra.1671s0023.1.v1.1 annot-version=v1.1
Cagra.1742s0012.1.ppacid=28910600 transcript=Cagra.1742s0012.1 locus=Cagra.1742s0012 ID=Cagra.1742s0012.1.v1.1 annot-version=v1.1
Cagra.1850s0007.1.ppacid=28896506 transcript=Cagra.1850s0007.1 locus=Cagra.1850s0007 ID=Cagra.1850s0007.1.v1.1 annot-version=v1.1
Cagra.1968s0128.1.ppacid=28910164 transcript=Cagra.1968s0128.1 locus=Cagra.1968s0128 ID=Cagra.1968s0128.1.v1.1 annot-version=v1.1
Cagra.2098s0014.1.ppacid=28919548 transcript=Cagra.2098s0014.1 locus=Cagra.2098s0014 ID=Cagra.2098s0014.1.v1.1 annot-version=v1.1
Cagra.2117s0001.1.ppacid=28905609 transcript=Cagra.2117s0001.1 locus=Cagra.2117s0001 ID=Cagra.2117s0001.1.v1.1 annot-version=v1.1
Cagra.2172s0002.1.ppacid=28901966 transcript=Cagra.2172s0002.1 locus=Cagra.2172s0002 ID=Cagra.2172s0002.1.v1.1 annot-version=v1.1
Cagra.2231s0003.1.ppacid=28900260 transcript=Cagra.2231s0003.1 locus=Cagra.2231s0003 ID=Cagra.2231s0003.1.v1.1 annot-version=v1.1
Cagra.2281s0012.1.ppacid=28911079 transcript=Cagra.2281s0012.1 locus=Cagra.2281s0012 ID=Cagra.2281s0012.1.v1.1 annot-version=v1.1
Cagra.2564s0007.1.ppacid=28894242 transcript=Cagra.2564s0007.1 locus=Cagra.2564s0007 ID=Cagra.2564s0007.1.v1.1 annot-version=v1.1
Cagra.25917s0003.1.ppacid=28917424 transcript=Cagra.25917s0003.1 locus=Cagra.25917s0003 ID=Cagra.25917s0003.1.v1.1 annot-version=v1.1
Cagra.2622s0029.1.ppacid=28895967 transcript=Cagra.2622s0029.1 locus=Cagra.2622s0029 ID=Cagra.2622s0029.1.v1.1 annot-version=v1.1
Cagra.3126s0022.1.ppacid=28902430 transcript=Cagra.3126s0022.1 locus=Cagra.3126s0022 ID=Cagra.3126s0022.1.v1.1 annot-version=v1.1
Cagra.3166s0002.1.ppacid=28899703 transcript=Cagra.3166s0002.1 locus=Cagra.3166s0002 ID=Cagra.3166s0002.1.v1.1 annot-version=v1.1
Cagra.3501s0099.1.ppacid=28902223 transcript=Cagra.3501s0099.1 locus=Cagra.3501s0099 ID=Cagra.3501s0099.1.v1.1 annot-version=v1.1
Cagra.3527s0052.1.ppacid=28898557 transcript=Cagra.3527s0052.1 locus=Cagra.3527s0052 ID=Cagra.3527s0052.1.v1.1 annot-version=v1.1
Cagra.4031s0033.1.ppacid=28904318 transcript=Cagra.4031s0033.1 locus=Cagra.4031s0033 ID=Cagra.4031s0033.1.v1.1 annot-version=v1.1
Cagra.4849s0010.1.ppacid=28898022 transcript=Cagra.4849s0010.1 locus=Cagra.4849s0010 ID=Cagra.4849s0010.1.v1.1 annot-version=v1.1
Cagra.5224s0010.1.ppacid=28912968 transcript=Cagra.5224s0010.1 locus=Cagra.5224s0010 ID=Cagra.5224s0010.1.v1.1 annot-version=v1.1
Cagra.5392s0005.1.ppacid=28906909 transcript=Cagra.5392s0005.1 locus=Cagra.5392s0005 ID=Cagra.5392s0005.1.v1.1 annot-version=v1.1
Cagra.6133s0022.1.ppacid=28918567 transcript=Cagra.6133s0022.1 locus=Cagra.6133s0022 ID=Cagra.6133s0022.1.v1.1 annot-version=v1.1
Cagra.6169s0001.1.ppacid=28911740 transcript=Cagra.6169s0001.1 locus=Cagra.6169s0001 ID=Cagra.6169s0001.1.v1.1 annot-version=v1.1
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum